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Method for generating text string dictionary, method for searching text string dictionary, and system for processing text string dictionary

專利號(hào)
US10867134B2
公開日期
2020-12-15
申請(qǐng)人
HITACHI HIGH-TECHNOLOGIES CORPORATION（JP Tokyo）
發(fā)明人
Kouichi Kimura
IPC分類
G06F40/30; G06F16/00; H03M7/30; G16B30/00; G06F40/242
技術(shù)領(lǐng)域
string,text,multicore,in,block,process,link,cpu,dictionary,registered
地域： Tokyo

摘要

A multicore CPU of a text string data analyzing device: loads a plurality of blocks obtained by dividing a text string dictionary into a memory; executes, in parallel on block groups executable independently of each other, an entry registration process of registering, character by character, unregistered text strings of text string data as new entries in the blocks in order from last characters; and outputs, as BW transformed data of the text string dictionary in which the text string data is already registered, a text string obtained by coupling text strings registered in entries of the blocks in a state in which no unregistered text strings of the blocks exists.

說明書

The display/output unit 106 displays a graphical user interface (GUI) for an operation and an analysis result. The display/output unit 106 displays the number of appearances (hits) of the query string 121 or the like as results 122 of searching from the text string dictionary 112 using the query string 121 as a search key. Instead of the number of appearances, information indicating whether the query string 121 has appeared once or more (appearance) or has not appeared (no appearance) may be used.

FIG. 2 shows an example in which the text string search system shown in FIG. 1 is applied to a DNA analysis system. When DNA sequence data is used as the text string data 111, the text string search system is applicable to a DNA sequence data search system. When amino-acid sequence (protein) data is used as the text string data 111, the text string search system is applicable to a protein data search system.

DNA sequence data 504 that is results of causing a DNA sequencer 503 to analyze DNA samples 502 collected from patients 501 is used as the text string data 111 shown in FIG. 1.

The text string dictionary 112 is DNA sequence dictionaries 505 independent for the patients 501 and is generated based on the text string data 111.

權(quán)利要求

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