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Systems and methods for encoding image features of high-resolution digital images of biological specimens

專利號(hào)
US11176412B2
公開(kāi)日期
2021-11-16
申請(qǐng)人
Ventana Medical Systems, Inc.(US AZ Tucson)
發(fā)明人
Yao Nie
IPC分類
G06K9/00; G06K9/62; G06T7/11; G06K9/46
技術(shù)領(lǐng)域
superpixel,image,clustering,centroid,clusters,in,cluster,vectors,vector,biological
地域: AZ AZ Tucson

摘要

An image analysis system for analyzing biological specimen images is disclosed. The system may include: a superpixel generator configured to obtain a biological specimen image and group pixels of the biological specimen image into a plurality of superpixels; a feature extractor configured to extract, from each superpixel in the plurality of superpixels, a feature vector comprising a plurality of image features; a clustering engine configured to assign the plurality of superpixels to a predefined number of clusters, each cluster being characterized by a centroid vector of feature vectors of superpixels assigned to the cluster; and a storage interface configured to store, for each superpixel in the plurality of superpixels, clustering information identifying the one cluster to which the superpixel is assigned. The system may also include a graph engine configured construct a graph based on the stored information, and use the graph to perform a graph-based image processing task.

說(shuō)明書(shū)

FIG. 2 shows an exemplary biological specimen image 210 (in this example, an H&E image), and an exemplary plurality of superpixels 220 generated for image 210 by superpixel generator 110. Based on this example, it is appreciated that each superpixel can include the same number of pixels or a different number of pixels (e.g., within a certain range), but in either case the number of superpixels can be significantly (e.g., one or more orders of magnitude) lower than the number of pixels in image 210.

After superpixels have been generated by superpixel generator 110 (or otherwise obtained by system 100), the superpixels can be provided to feature extractor 111. Feature extractor 111 may extract from (or generate for) each superpixel a plurality of image features characterizing (or representing) the superpixel. As discussed above, the extracted image features may include, for example, texture features such Haralick features, bag-of-words features and the like. The values of the plurality of image features may be combined into a high-dimensional vector, hereinafter referred to as the “feature vector” characterizing the superpixel. For example, if M features are extracted for each superpixel, each superpixel can be characterized by an M-dimensional feature vector.

權(quán)利要求

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