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Systems and methods for encoding image features of high-resolution digital images of biological specimens

專利號
US11176412B2
公開日期
2021-11-16
申請人
Ventana Medical Systems, Inc.(US AZ Tucson)
發(fā)明人
Yao Nie
IPC分類
G06K9/00; G06K9/62; G06T7/11; G06K9/46
技術(shù)領(lǐng)域
superpixel,image,clustering,centroid,clusters,in,cluster,vectors,vector,biological
地域: AZ AZ Tucson

摘要

An image analysis system for analyzing biological specimen images is disclosed. The system may include: a superpixel generator configured to obtain a biological specimen image and group pixels of the biological specimen image into a plurality of superpixels; a feature extractor configured to extract, from each superpixel in the plurality of superpixels, a feature vector comprising a plurality of image features; a clustering engine configured to assign the plurality of superpixels to a predefined number of clusters, each cluster being characterized by a centroid vector of feature vectors of superpixels assigned to the cluster; and a storage interface configured to store, for each superpixel in the plurality of superpixels, clustering information identifying the one cluster to which the superpixel is assigned. The system may also include a graph engine configured construct a graph based on the stored information, and use the graph to perform a graph-based image processing task.

說明書

To illustrate with a more specific example, FIG. 3A shows an exemplary H&E image containing various types of regions, such as the necrosis region, the cancer (tumor) region, the lymphocytes region, and the background region. FIG. 3B shows the same image being overlaid with boundaries of exemplary superpixels generated for the image by superpixel generator 110. In this example, the number of generated superpixels is N=372. Assuming now that for each superpixel, the following image features are generated for each of the three color channels R, G, and B: a histogram of the intensity, a histogram of the gradient magnitude, and a histogram of the gradient direction. If each histogram includes 10 bins, for example, then the total number of features extracted for each superpixels is M=10×3×3=90. That is, each superpixel can be characterized by a ninety-dimensional feature vector. Clustering engine 112 can then be configured to cluster (e.g., using k-means) the feature vectors into K=10 clusters, resulting in ten ninety-dimensional centroid vectors representing the ten clusters. In this example, a compression ratio of 372×90/(372+10×90+10×9/2)=25.42 can be achieved if centroid vectors are stored, and an even higher compression ratio of 372×90/(372+10×9/2)=80.28 can be achieved if centroid vectors are not stored.

權(quán)利要求

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