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Systems and methods for encoding image features of high-resolution digital images of biological specimens

專利號(hào)
US11176412B2
公開(kāi)日期
2021-11-16
申請(qǐng)人
Ventana Medical Systems, Inc.(US AZ Tucson)
發(fā)明人
Yao Nie
IPC分類
G06K9/00; G06K9/62; G06T7/11; G06K9/46
技術(shù)領(lǐng)域
superpixel,image,clustering,centroid,clusters,in,cluster,vectors,vector,biological
地域: AZ AZ Tucson

摘要

An image analysis system for analyzing biological specimen images is disclosed. The system may include: a superpixel generator configured to obtain a biological specimen image and group pixels of the biological specimen image into a plurality of superpixels; a feature extractor configured to extract, from each superpixel in the plurality of superpixels, a feature vector comprising a plurality of image features; a clustering engine configured to assign the plurality of superpixels to a predefined number of clusters, each cluster being characterized by a centroid vector of feature vectors of superpixels assigned to the cluster; and a storage interface configured to store, for each superpixel in the plurality of superpixels, clustering information identifying the one cluster to which the superpixel is assigned. The system may also include a graph engine configured construct a graph based on the stored information, and use the graph to perform a graph-based image processing task.

說(shuō)明書

In order to automatically analyze a biological specimen image, a pre-processing step of image feature extraction is often required. During feature extraction, various image features such as pixel intensities, pixel intensity gradients (magnitude and direction), and the like can be extracted from the image. The features can then be used by image analysis tasks such as region segmentation, cell segmentation, scoring, image retrieval, and the like.

However, image feature extraction can be one of the most computationally expensive step in the image analysis pipeline, because high-dimensional features are often required to characterize the complex image contents. In digital pathology, the computational requirements are even higher because of the immense data density of digitized whole slide images. Therefore, in digital pathology and other applications processing high-resolution images of biological specimens, it is desirable to precompute the image features and store them, thereby avoiding multiple redundant computations.

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